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Class: InstanceEdit

Provenance record describing a curation action such as creation, modification, review, or revision.

URI: reactome:InstanceEdit

 classDiagram
    class InstanceEdit
    click InstanceEdit href "../InstanceEdit/"
      DatabaseObject <|-- InstanceEdit
        click DatabaseObject href "../DatabaseObject/"

      InstanceEdit : author





        InstanceEdit --> "*" Person : author
        click Person href "../Person/"



      InstanceEdit : created





        InstanceEdit --> "1" InstanceEdit : created
        click InstanceEdit href "../InstanceEdit/"



      InstanceEdit : date

      InstanceEdit : definition

      InstanceEdit : description

      InstanceEdit : display_label

      InstanceEdit : id

      InstanceEdit : modified





        InstanceEdit --> "*" InstanceEdit : modified
        click InstanceEdit href "../InstanceEdit/"



      InstanceEdit : name

      InstanceEdit : previous_stable_identifier

      InstanceEdit : reactome_db_id

      InstanceEdit : reactome_stable_identifier

      InstanceEdit : source_schema_class

Inheritance

Class Properties

Property Value
Class URI reactome:InstanceEdit

Slots

Name Cardinality and Range Description Inheritance
date 0..1
Datetime
Timestamp or date string for the edit activity direct
author *
Person
Person or people responsible for the edit activity direct
reactome_db_id 1
Integer
Internal Reactome database identifier assigned to a database object DatabaseObject
reactome_stable_identifier 1
String
Stable public Reactome identifier for an object DatabaseObject
source_schema_class 1
String
Name of the source Reactome schema class from which the instance derives DatabaseObject
display_label 1
String
Preferred display label used by Reactome for user-facing presentation DatabaseObject
definition 0..1
String
Curated textual definition that states what the object is DatabaseObject
previous_stable_identifier 0..1
String
Deprecated or previous stable Reactome identifier retained for traceability DatabaseObject
created 1
InstanceEdit
Provenance link to the curation event that originally created the object reco... DatabaseObject
modified *
InstanceEdit
Provenance links to subsequent modifications of the object record DatabaseObject
id 1
String
Unique identifier for an instance in the serialized dataset NamedEntity
name 0..1
String
Human-readable primary label for an object NamedEntity
description 0..1
String
Free-text textual description of an object NamedEntity

Usages

used by used in type used
DatabaseObject created range InstanceEdit
DatabaseObject modified range InstanceEdit
InstanceEdit created range InstanceEdit
InstanceEdit modified range InstanceEdit
Publication created range InstanceEdit
Publication modified range InstanceEdit
LiteratureReference created range InstanceEdit
LiteratureReference modified range InstanceEdit
Person created range InstanceEdit
Person modified range InstanceEdit
Summation created range InstanceEdit
Summation modified range InstanceEdit
Event reviewed range InstanceEdit
Event revised range InstanceEdit
Event created range InstanceEdit
Event modified range InstanceEdit
Pathway reviewed range InstanceEdit
Pathway revised range InstanceEdit
Pathway created range InstanceEdit
Pathway modified range InstanceEdit
ReactionLikeEvent reviewed range InstanceEdit
ReactionLikeEvent revised range InstanceEdit
ReactionLikeEvent created range InstanceEdit
ReactionLikeEvent modified range InstanceEdit
Reaction reviewed range InstanceEdit
Reaction revised range InstanceEdit
Reaction created range InstanceEdit
Reaction modified range InstanceEdit
BlackBoxEvent reviewed range InstanceEdit
BlackBoxEvent revised range InstanceEdit
BlackBoxEvent created range InstanceEdit
BlackBoxEvent modified range InstanceEdit
Polymerization reviewed range InstanceEdit
Polymerization revised range InstanceEdit
Polymerization created range InstanceEdit
Polymerization modified range InstanceEdit
Depolymerization reviewed range InstanceEdit
Depolymerization revised range InstanceEdit
Depolymerization created range InstanceEdit
Depolymerization modified range InstanceEdit
PhysicalEntity created range InstanceEdit
PhysicalEntity modified range InstanceEdit
SimpleEntity created range InstanceEdit
SimpleEntity modified range InstanceEdit
GenomeEncodedEntity created range InstanceEdit
GenomeEncodedEntity modified range InstanceEdit
SequenceEntity created range InstanceEdit
SequenceEntity modified range InstanceEdit
Protein created range InstanceEdit
Protein modified range InstanceEdit
Complex created range InstanceEdit
Complex modified range InstanceEdit
EntitySet created range InstanceEdit
EntitySet modified range InstanceEdit
CandidateSet created range InstanceEdit
CandidateSet modified range InstanceEdit
DefinedSet created range InstanceEdit
DefinedSet modified range InstanceEdit
Polymer created range InstanceEdit
Polymer modified range InstanceEdit
Cell created range InstanceEdit
Cell modified range InstanceEdit
OtherEntity created range InstanceEdit
OtherEntity modified range InstanceEdit
Drug created range InstanceEdit
Drug modified range InstanceEdit
ChemicalDrug created range InstanceEdit
ChemicalDrug modified range InstanceEdit
ProteinDrug created range InstanceEdit
ProteinDrug modified range InstanceEdit
RnaDrug created range InstanceEdit
RnaDrug modified range InstanceEdit
ReferenceEntity created range InstanceEdit
ReferenceEntity modified range InstanceEdit
ReferenceSequence created range InstanceEdit
ReferenceSequence modified range InstanceEdit
ReferenceGeneProduct created range InstanceEdit
ReferenceGeneProduct modified range InstanceEdit
ReferenceIsoform created range InstanceEdit
ReferenceIsoform modified range InstanceEdit
ReferenceDnaSequence created range InstanceEdit
ReferenceDnaSequence modified range InstanceEdit
ReferenceRnaSequence created range InstanceEdit
ReferenceRnaSequence modified range InstanceEdit
ReferenceMolecule created range InstanceEdit
ReferenceMolecule modified range InstanceEdit
ReferenceGroup created range InstanceEdit
ReferenceGroup modified range InstanceEdit
ReferenceTherapeutic created range InstanceEdit
ReferenceTherapeutic modified range InstanceEdit
ReferenceDatabase created range InstanceEdit
ReferenceDatabase modified range InstanceEdit
DatabaseIdentifier created range InstanceEdit
DatabaseIdentifier modified range InstanceEdit
CatalystActivity created range InstanceEdit
CatalystActivity modified range InstanceEdit
Regulation created range InstanceEdit
Regulation modified range InstanceEdit
PositiveRegulation created range InstanceEdit
PositiveRegulation modified range InstanceEdit
NegativeRegulation created range InstanceEdit
NegativeRegulation modified range InstanceEdit
Requirement created range InstanceEdit
Requirement modified range InstanceEdit
Interaction created range InstanceEdit
Interaction modified range InstanceEdit
ReactionTypeTerm created range InstanceEdit
ReactionTypeTerm modified range InstanceEdit
AbstractModifiedResidue created range InstanceEdit
AbstractModifiedResidue modified range InstanceEdit
OrganismTaxon created range InstanceEdit
OrganismTaxon modified range InstanceEdit
Taxon created range InstanceEdit
Taxon modified range InstanceEdit
Compartment created range InstanceEdit
Compartment modified range InstanceEdit
Disease created range InstanceEdit
Disease modified range InstanceEdit
GoMolecularFunctionTerm created range InstanceEdit
GoMolecularFunctionTerm modified range InstanceEdit
GoBiologicalProcessTerm created range InstanceEdit
GoBiologicalProcessTerm modified range InstanceEdit
GoCellularComponentTerm created range InstanceEdit
GoCellularComponentTerm modified range InstanceEdit

Comments

  • Typically stores who performed an edit and when the edit occurred.

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/reactome-ontology

Mappings

Mapping Type Mapped Value
self reactome:InstanceEdit
native reactome:InstanceEdit

LinkML Source

Direct

name: instance_edit
description: Provenance record describing a curation action such as creation, modification,
  review, or revision.
comments:
- Typically stores who performed an edit and when the edit occurred.
from_schema: https://w3id.org/reactome-ontology
is_a: database_object
attributes:
  date:
    name: date
    description: Timestamp or date string for the edit activity.
    from_schema: https://w3id.org/reactome-ontology
    rank: 1000
    domain_of:
    - instance_edit
    range: datetime
  author:
    name: author
    description: Person or people responsible for the edit activity.
    from_schema: https://w3id.org/reactome-ontology
    rank: 1000
    domain_of:
    - instance_edit
    range: person
    multivalued: true
    inlined: true
    inlined_as_list: true
class_uri: reactome:InstanceEdit

Induced

name: instance_edit
description: Provenance record describing a curation action such as creation, modification,
  review, or revision.
comments:
- Typically stores who performed an edit and when the edit occurred.
from_schema: https://w3id.org/reactome-ontology
is_a: database_object
attributes:
  date:
    name: date
    description: Timestamp or date string for the edit activity.
    from_schema: https://w3id.org/reactome-ontology
    rank: 1000
    alias: date
    owner: instance_edit
    domain_of:
    - instance_edit
    range: datetime
  author:
    name: author
    description: Person or people responsible for the edit activity.
    from_schema: https://w3id.org/reactome-ontology
    rank: 1000
    alias: author
    owner: instance_edit
    domain_of:
    - instance_edit
    range: person
    multivalued: true
    inlined: true
    inlined_as_list: true
  reactome_db_id:
    name: reactome_db_id
    description: Internal Reactome database identifier assigned to a database object.
    comments:
    - Reactome DB_ID values are implementation-oriented identifiers rather than stable
      public identifiers.
    from_schema: https://w3id.org/reactome-ontology
    rank: 1000
    slot_uri: reactome:reactomeDbId
    alias: reactome_db_id
    owner: instance_edit
    domain_of:
    - database_object
    range: integer
    required: true
    multivalued: false
  reactome_stable_identifier:
    name: reactome_stable_identifier
    description: Stable public Reactome identifier for an object.
    comments:
    - Typically corresponds to the curated Reactome stable accession such as R-HSA-xxxxx.
    from_schema: https://w3id.org/reactome-ontology
    rank: 1000
    slot_uri: reactome:reactomeStableIdentifier
    alias: reactome_stable_identifier
    owner: instance_edit
    domain_of:
    - database_object
    range: string
    required: true
    multivalued: false
  source_schema_class:
    name: source_schema_class
    description: Name of the source Reactome schema class from which the instance
      derives.
    comments:
    - Useful when preserving frame-schema provenance or round-tripping with the original
      Reactome graph.
    from_schema: https://w3id.org/reactome-ontology
    rank: 1000
    slot_uri: reactome:sourceSchemaClass
    alias: source_schema_class
    owner: instance_edit
    domain_of:
    - database_object
    range: string
    required: true
    multivalued: false
  display_label:
    name: display_label
    description: Preferred display label used by Reactome for user-facing presentation.
    comments:
    - Often combines identity and contextual state into a concise label.
    from_schema: https://w3id.org/reactome-ontology
    rank: 1000
    is_a: name
    slot_uri: reactome:displayLabel
    alias: display_label
    owner: instance_edit
    domain_of:
    - database_object
    range: string
    required: true
    multivalued: false
  definition:
    name: definition
    description: Curated textual definition that states what the object is.
    comments:
    - Intended for conceptual definitions rather than narrative summaries.
    from_schema: https://w3id.org/reactome-ontology
    rank: 1000
    slot_uri: reactome:definition
    alias: definition
    owner: instance_edit
    domain_of:
    - database_object
    range: string
    multivalued: false
  previous_stable_identifier:
    name: previous_stable_identifier
    description: Deprecated or previous stable Reactome identifier retained for traceability.
    comments:
    - Useful during migration, identifier replacement, and legacy resolution.
    from_schema: https://w3id.org/reactome-ontology
    rank: 1000
    slot_uri: reactome:previousStableIdentifier
    alias: previous_stable_identifier
    owner: instance_edit
    domain_of:
    - database_object
    range: string
    multivalued: false
  created:
    name: created
    description: Provenance link to the curation event that originally created the
      object record.
    comments:
    - Usually points to an InstanceEdit containing editor and date metadata.
    from_schema: https://w3id.org/reactome-ontology
    rank: 1000
    slot_uri: reactome:created
    alias: created
    owner: instance_edit
    domain_of:
    - database_object
    range: instance_edit
    required: true
    multivalued: false
  modified:
    name: modified
    description: Provenance links to subsequent modifications of the object record.
    comments:
    - Multiple modifications are common across curation history.
    from_schema: https://w3id.org/reactome-ontology
    rank: 1000
    slot_uri: reactome:modified
    alias: modified
    owner: instance_edit
    domain_of:
    - database_object
    range: instance_edit
    multivalued: true
  id:
    name: id
    description: Unique identifier for an instance in the serialized dataset.
    comments:
    - This may be a local identifier, CURIE, URI, or other serialization key.
    from_schema: https://w3id.org/reactome-ontology
    rank: 1000
    slot_uri: dcterms:identifier
    identifier: true
    alias: id
    owner: instance_edit
    domain_of:
    - named_entity
    range: string
    required: true
  name:
    name: name
    description: Human-readable primary label for an object.
    comments:
    - Generic reusable naming slot for schema-wide use.
    from_schema: https://w3id.org/reactome-ontology
    rank: 1000
    slot_uri: rdfs:label
    alias: name
    owner: instance_edit
    domain_of:
    - named_entity
    range: string
  description:
    name: description
    description: Free-text textual description of an object.
    comments:
    - Can hold editorial notes, plain-language explanations, or short summaries.
    from_schema: https://w3id.org/reactome-ontology
    rank: 1000
    slot_uri: dcterms:description
    alias: description
    owner: instance_edit
    domain_of:
    - named_entity
    range: string
    multivalued: false
class_uri: reactome:InstanceEdit