Class: CatalystActivity

name: catalyst_activity
description: Reified catalytic assertion connecting a catalyst bearer, a GO molecular
  function, and one or more catalyzed reaction-like events.
comments:
- This is one of the most semantically important reified node types in Reactome.
from_schema: https://w3id.org/reactome-ontology
is_a: database_object
slots:
- has_catalyst
- has_go_molecular_function
- has_active_unit
- catalyzes
- supported_by
slot_usage:
  has_catalyst:
    name: has_catalyst
    required: true
  has_go_molecular_function:
    name: has_go_molecular_function
    required: true
class_uri: reactome:CatalystActivity

name: catalyst_activity
description: Reified catalytic assertion connecting a catalyst bearer, a GO molecular
  function, and one or more catalyzed reaction-like events.
comments:
- This is one of the most semantically important reified node types in Reactome.
from_schema: https://w3id.org/reactome-ontology
is_a: database_object
slot_usage:
  has_catalyst:
    name: has_catalyst
    required: true
  has_go_molecular_function:
    name: has_go_molecular_function
    required: true
attributes:
  has_catalyst:
    name: has_catalyst
    description: Physical entity serving as the bearer of a catalyst activity.
    comments:
    - Used inside reified catalyst activity objects.
    from_schema: https://w3id.org/reactome-ontology
    rank: 1000
    slot_uri: reactome:hasCatalyst
    alias: has_catalyst
    owner: catalyst_activity
    domain_of:
    - catalyst_activity
    range: physical_entity
    required: true
    multivalued: false
  has_go_molecular_function:
    name: has_go_molecular_function
    description: GO molecular function term asserted in a catalyst activity.
    comments:
    - Reactome reifies catalysis so the molecular function can be attached explicitly.
    from_schema: https://w3id.org/reactome-ontology
    rank: 1000
    slot_uri: reactome:hasGoMolecularFunction
    alias: has_go_molecular_function
    owner: catalyst_activity
    domain_of:
    - catalyst_activity
    range: go_molecular_function_term
    required: true
    multivalued: false
  has_active_unit:
    name: has_active_unit
    description: Subunit, domain-bearing fragment, or active molecular portion responsible
      for catalytic or regulatory activity.
    comments:
    - Reactome can attach active-unit detail to catalyst activities and regulation
      objects.
    from_schema: https://w3id.org/reactome-ontology
    rank: 1000
    slot_uri: reactome:hasActiveUnit
    alias: has_active_unit
    owner: catalyst_activity
    domain_of:
    - catalyst_activity
    - regulation
    range: physical_entity
    multivalued: true
    inlined: true
    inlined_as_list: true
  catalyzes:
    name: catalyzes
    description: Reaction-like event catalyzed by the given catalyst activity.
    comments:
    - Allows one catalyst activity node to connect molecular function and event participation.
    from_schema: https://w3id.org/reactome-ontology
    rank: 1000
    slot_uri: reactome:catalyzes
    alias: catalyzes
    owner: catalyst_activity
    domain_of:
    - catalyst_activity
    range: reaction_like_event
    multivalued: true
    inlined: true
    inlined_as_list: true
  supported_by:
    name: supported_by
    description: Publication supporting the existence, mechanism, or curation of the
      object.
    comments:
    - Often points to PubMed-backed literature references.
    from_schema: https://w3id.org/reactome-ontology
    rank: 1000
    slot_uri: reactome:supportedBy
    alias: supported_by
    owner: catalyst_activity
    domain_of:
    - event
    - catalyst_activity
    - regulation
    range: publication
    multivalued: true
  reactome_db_id:
    name: reactome_db_id
    description: Internal Reactome database identifier assigned to a database object.
    comments:
    - Reactome DB_ID values are implementation-oriented identifiers rather than stable
      public identifiers.
    from_schema: https://w3id.org/reactome-ontology
    rank: 1000
    slot_uri: reactome:reactomeDbId
    alias: reactome_db_id
    owner: catalyst_activity
    domain_of:
    - database_object
    range: integer
    required: true
    multivalued: false
  reactome_stable_identifier:
    name: reactome_stable_identifier
    description: Stable public Reactome identifier for an object.
    comments:
    - Typically corresponds to the curated Reactome stable accession such as R-HSA-xxxxx.
    from_schema: https://w3id.org/reactome-ontology
    rank: 1000
    slot_uri: reactome:reactomeStableIdentifier
    alias: reactome_stable_identifier
    owner: catalyst_activity
    domain_of:
    - database_object
    range: string
    required: true
    multivalued: false
  source_schema_class:
    name: source_schema_class
    description: Name of the source Reactome schema class from which the instance
      derives.
    comments:
    - Useful when preserving frame-schema provenance or round-tripping with the original
      Reactome graph.
    from_schema: https://w3id.org/reactome-ontology
    rank: 1000
    slot_uri: reactome:sourceSchemaClass
    alias: source_schema_class
    owner: catalyst_activity
    domain_of:
    - database_object
    range: string
    required: true
    multivalued: false
  display_label:
    name: display_label
    description: Preferred display label used by Reactome for user-facing presentation.
    comments:
    - Often combines identity and contextual state into a concise label.
    from_schema: https://w3id.org/reactome-ontology
    rank: 1000
    is_a: name
    slot_uri: reactome:displayLabel
    alias: display_label
    owner: catalyst_activity
    domain_of:
    - database_object
    range: string
    required: true
    multivalued: false
  definition:
    name: definition
    description: Curated textual definition that states what the object is.
    comments:
    - Intended for conceptual definitions rather than narrative summaries.
    from_schema: https://w3id.org/reactome-ontology
    rank: 1000
    slot_uri: reactome:definition
    alias: definition
    owner: catalyst_activity
    domain_of:
    - database_object
    range: string
    multivalued: false
  previous_stable_identifier:
    name: previous_stable_identifier
    description: Deprecated or previous stable Reactome identifier retained for traceability.
    comments:
    - Useful during migration, identifier replacement, and legacy resolution.
    from_schema: https://w3id.org/reactome-ontology
    rank: 1000
    slot_uri: reactome:previousStableIdentifier
    alias: previous_stable_identifier
    owner: catalyst_activity
    domain_of:
    - database_object
    range: string
    multivalued: false
  created:
    name: created
    description: Provenance link to the curation event that originally created the
      object record.
    comments:
    - Usually points to an InstanceEdit containing editor and date metadata.
    from_schema: https://w3id.org/reactome-ontology
    rank: 1000
    slot_uri: reactome:created
    alias: created
    owner: catalyst_activity
    domain_of:
    - database_object
    range: instance_edit
    required: true
    multivalued: false
  modified:
    name: modified
    description: Provenance links to subsequent modifications of the object record.
    comments:
    - Multiple modifications are common across curation history.
    from_schema: https://w3id.org/reactome-ontology
    rank: 1000
    slot_uri: reactome:modified
    alias: modified
    owner: catalyst_activity
    domain_of:
    - database_object
    range: instance_edit
    multivalued: true
  id:
    name: id
    description: Unique identifier for an instance in the serialized dataset.
    comments:
    - This may be a local identifier, CURIE, URI, or other serialization key.
    from_schema: https://w3id.org/reactome-ontology
    rank: 1000
    slot_uri: dcterms:identifier
    identifier: true
    alias: id
    owner: catalyst_activity
    domain_of:
    - named_entity
    range: string
    required: true
  name:
    name: name
    description: Human-readable primary label for an object.
    comments:
    - Generic reusable naming slot for schema-wide use.
    from_schema: https://w3id.org/reactome-ontology
    rank: 1000
    slot_uri: rdfs:label
    alias: name
    owner: catalyst_activity
    domain_of:
    - named_entity
    range: string
  description:
    name: description
    description: Free-text textual description of an object.
    comments:
    - Can hold editorial notes, plain-language explanations, or short summaries.
    from_schema: https://w3id.org/reactome-ontology
    rank: 1000
    slot_uri: dcterms:description
    alias: description
    owner: catalyst_activity
    domain_of:
    - named_entity
    range: string
    multivalued: false
class_uri: reactome:CatalystActivity