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Class: GoCellularComponentTerm

Wrapper object for a GO cellular component term used in entity or location annotation.

URI: reactome:GoCellularComponentTerm

 classDiagram
    class GoCellularComponentTerm
    click GoCellularComponentTerm href "../GoCellularComponentTerm/"
      DatabaseObject <|-- GoCellularComponentTerm
        click DatabaseObject href "../DatabaseObject/"

      GoCellularComponentTerm : created





        GoCellularComponentTerm --> "1" InstanceEdit : created
        click InstanceEdit href "../InstanceEdit/"



      GoCellularComponentTerm : definition

      GoCellularComponentTerm : description

      GoCellularComponentTerm : display_label

      GoCellularComponentTerm : id

      GoCellularComponentTerm : modified





        GoCellularComponentTerm --> "*" InstanceEdit : modified
        click InstanceEdit href "../InstanceEdit/"



      GoCellularComponentTerm : name

      GoCellularComponentTerm : previous_stable_identifier

      GoCellularComponentTerm : reactome_db_id

      GoCellularComponentTerm : reactome_stable_identifier

      GoCellularComponentTerm : source_schema_class

Inheritance

Class Properties

Property Value
Class URI reactome:GoCellularComponentTerm

Slots

Name Cardinality and Range Description Inheritance
reactome_db_id 1
Integer
Internal Reactome database identifier assigned to a database object DatabaseObject
reactome_stable_identifier 1
String
Stable public Reactome identifier for an object DatabaseObject
source_schema_class 1
String
Name of the source Reactome schema class from which the instance derives DatabaseObject
display_label 1
String
Preferred display label used by Reactome for user-facing presentation DatabaseObject
definition 0..1
String
Curated textual definition that states what the object is DatabaseObject
previous_stable_identifier 0..1
String
Deprecated or previous stable Reactome identifier retained for traceability DatabaseObject
created 1
InstanceEdit
Provenance link to the curation event that originally created the object reco... DatabaseObject
modified *
InstanceEdit
Provenance links to subsequent modifications of the object record DatabaseObject
id 1
String
Unique identifier for an instance in the serialized dataset NamedEntity
name 0..1
String
Human-readable primary label for an object NamedEntity
description 0..1
String
Free-text textual description of an object NamedEntity

Usages

used by used in type used
PhysicalEntity has_go_cellular_component range GoCellularComponentTerm
SimpleEntity has_go_cellular_component range GoCellularComponentTerm
GenomeEncodedEntity has_go_cellular_component range GoCellularComponentTerm
SequenceEntity has_go_cellular_component range GoCellularComponentTerm
Protein has_go_cellular_component range GoCellularComponentTerm
Complex has_go_cellular_component range GoCellularComponentTerm
EntitySet has_go_cellular_component range GoCellularComponentTerm
CandidateSet has_go_cellular_component range GoCellularComponentTerm
DefinedSet has_go_cellular_component range GoCellularComponentTerm
Polymer has_go_cellular_component range GoCellularComponentTerm
Cell has_go_cellular_component range GoCellularComponentTerm
OtherEntity has_go_cellular_component range GoCellularComponentTerm
Drug has_go_cellular_component range GoCellularComponentTerm
ChemicalDrug has_go_cellular_component range GoCellularComponentTerm
ProteinDrug has_go_cellular_component range GoCellularComponentTerm
RnaDrug has_go_cellular_component range GoCellularComponentTerm

Comments

  • Often complements explicit compartment modeling.

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/reactome-ontology

Mappings

Mapping Type Mapped Value
self reactome:GoCellularComponentTerm
native reactome:GoCellularComponentTerm

LinkML Source

Direct

name: go_cellular_component_term
description: Wrapper object for a GO cellular component term used in entity or location
  annotation.
comments:
- Often complements explicit compartment modeling.
from_schema: https://w3id.org/reactome-ontology
is_a: database_object
class_uri: reactome:GoCellularComponentTerm

Induced

name: go_cellular_component_term
description: Wrapper object for a GO cellular component term used in entity or location
  annotation.
comments:
- Often complements explicit compartment modeling.
from_schema: https://w3id.org/reactome-ontology
is_a: database_object
attributes:
  reactome_db_id:
    name: reactome_db_id
    description: Internal Reactome database identifier assigned to a database object.
    comments:
    - Reactome DB_ID values are implementation-oriented identifiers rather than stable
      public identifiers.
    from_schema: https://w3id.org/reactome-ontology
    rank: 1000
    slot_uri: reactome:reactomeDbId
    alias: reactome_db_id
    owner: go_cellular_component_term
    domain_of:
    - database_object
    range: integer
    required: true
    multivalued: false
  reactome_stable_identifier:
    name: reactome_stable_identifier
    description: Stable public Reactome identifier for an object.
    comments:
    - Typically corresponds to the curated Reactome stable accession such as R-HSA-xxxxx.
    from_schema: https://w3id.org/reactome-ontology
    rank: 1000
    slot_uri: reactome:reactomeStableIdentifier
    alias: reactome_stable_identifier
    owner: go_cellular_component_term
    domain_of:
    - database_object
    range: string
    required: true
    multivalued: false
  source_schema_class:
    name: source_schema_class
    description: Name of the source Reactome schema class from which the instance
      derives.
    comments:
    - Useful when preserving frame-schema provenance or round-tripping with the original
      Reactome graph.
    from_schema: https://w3id.org/reactome-ontology
    rank: 1000
    slot_uri: reactome:sourceSchemaClass
    alias: source_schema_class
    owner: go_cellular_component_term
    domain_of:
    - database_object
    range: string
    required: true
    multivalued: false
  display_label:
    name: display_label
    description: Preferred display label used by Reactome for user-facing presentation.
    comments:
    - Often combines identity and contextual state into a concise label.
    from_schema: https://w3id.org/reactome-ontology
    rank: 1000
    is_a: name
    slot_uri: reactome:displayLabel
    alias: display_label
    owner: go_cellular_component_term
    domain_of:
    - database_object
    range: string
    required: true
    multivalued: false
  definition:
    name: definition
    description: Curated textual definition that states what the object is.
    comments:
    - Intended for conceptual definitions rather than narrative summaries.
    from_schema: https://w3id.org/reactome-ontology
    rank: 1000
    slot_uri: reactome:definition
    alias: definition
    owner: go_cellular_component_term
    domain_of:
    - database_object
    range: string
    multivalued: false
  previous_stable_identifier:
    name: previous_stable_identifier
    description: Deprecated or previous stable Reactome identifier retained for traceability.
    comments:
    - Useful during migration, identifier replacement, and legacy resolution.
    from_schema: https://w3id.org/reactome-ontology
    rank: 1000
    slot_uri: reactome:previousStableIdentifier
    alias: previous_stable_identifier
    owner: go_cellular_component_term
    domain_of:
    - database_object
    range: string
    multivalued: false
  created:
    name: created
    description: Provenance link to the curation event that originally created the
      object record.
    comments:
    - Usually points to an InstanceEdit containing editor and date metadata.
    from_schema: https://w3id.org/reactome-ontology
    rank: 1000
    slot_uri: reactome:created
    alias: created
    owner: go_cellular_component_term
    domain_of:
    - database_object
    range: instance_edit
    required: true
    multivalued: false
  modified:
    name: modified
    description: Provenance links to subsequent modifications of the object record.
    comments:
    - Multiple modifications are common across curation history.
    from_schema: https://w3id.org/reactome-ontology
    rank: 1000
    slot_uri: reactome:modified
    alias: modified
    owner: go_cellular_component_term
    domain_of:
    - database_object
    range: instance_edit
    multivalued: true
  id:
    name: id
    description: Unique identifier for an instance in the serialized dataset.
    comments:
    - This may be a local identifier, CURIE, URI, or other serialization key.
    from_schema: https://w3id.org/reactome-ontology
    rank: 1000
    slot_uri: dcterms:identifier
    identifier: true
    alias: id
    owner: go_cellular_component_term
    domain_of:
    - named_entity
    range: string
    required: true
  name:
    name: name
    description: Human-readable primary label for an object.
    comments:
    - Generic reusable naming slot for schema-wide use.
    from_schema: https://w3id.org/reactome-ontology
    rank: 1000
    slot_uri: rdfs:label
    alias: name
    owner: go_cellular_component_term
    domain_of:
    - named_entity
    range: string
  description:
    name: description
    description: Free-text textual description of an object.
    comments:
    - Can hold editorial notes, plain-language explanations, or short summaries.
    from_schema: https://w3id.org/reactome-ontology
    rank: 1000
    slot_uri: dcterms:description
    alias: description
    owner: go_cellular_component_term
    domain_of:
    - named_entity
    range: string
    multivalued: false
class_uri: reactome:GoCellularComponentTerm