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Slot: source

Data source name

URI: dcterms:source Alias: source

Applicable Classes

Name Description Modifies Slot
Pathway Reactome pathway entity representing a curated biological pathway or reaction... no
CellularComponent Gene Ontology Cellular Component term no
Relationship Abstract base for reified relationships (edges with explicit properties) no
DiseaseOrPhenotype Abstract parent class for all disease/phenotype entities no
VariantDiseaseAssociation Optional association for Variant -> Disease when variant-level evidence, clin... no
Protein Protein product (UniProt model) no
ExposureDiseaseAssociation Optional association for ExposureOrStressor -> Disease when epidemiology, mec... no
TranscriptionFactorRegulationAssociation Optional association for TranscriptionFactor -> Gene when direction, confiden... no
DiseaseSubtype Molecularly-defined disease subtype derived from clustering analysis (transcr... no
Association Abstract base for optional evidence-bearing associations no
BiologicalProcess Gene Ontology Biological Process term no
VariantProteinEffectAssociation Optional association for Variant -> Protein when protein consequence, predict... no
Gene Human gene entity (Entrez/NCBI model) no
DrugTargetAssociation Optional association for Drug -> MolecularEntity when action type, binding af... no
GeneDiseaseAssociation Optional association for Gene -> Disease when causal/risk/protective or corre... no
Drug Pharmaceutical compound (DrugBank model) no
Disease Disease entity no
NamedEntity Root class for all named entities in the ALS-KG ontology no
DrugDiseaseTherapeuticAssociation Optional association for Drug -> Disease when therapeutic indication, approva... no
TranscriptionFactor Gene encoding a transcription factor (TF) no
ProteinPathwayAssociation Optional association for Protein -> Pathway when Reactome evidence code, sour... no
BiologicalConcept Abstract base for functional/biological concepts from GO and related ontologi... no
MolecularFunction Gene Ontology Molecular Function term no
ProteinProteinInteractionAssociation Optional association for Protein -> Protein when interaction score, interacti... no
Variant Genetic sequence variant (ClinVar model) no
OntologyClass Abstract base for entity classes (nodes in knowledge graph) no
Anatomy Anatomical structure (UBERON ontology) no
DiseasePhenotypeAssociation Optional association for Disease -> Phenotype when the clinical feature requi... no
Phenotype Phenotypic feature (HPO term) no
ExposureOrStressor Environmental exposure or chemical stressor from CTD ontology no
ChemicalEntity Abstract base for chemical and pharmacological entities (drugs, exposures, me... no
GeneExpressionAssociation Optional association for Gene -> Anatomy when expression level, specificity, ... no
MolecularEntity Abstract base for molecular-level entities (genes, proteins, variants) no
DiseaseDiseaseAssociation Optional association for Disease -> Disease when disease-disease edges need r... no

Properties

Type and Range

Property Value
Range String
Domain Of NamedEntity, Relationship, Association
Slot URI dcterms:source

Cardinality and Requirements

Property Value

Identifier and Mapping Information

Schema Source

  • from schema: https://cair2015.github.io/als-kg

Mappings

Mapping Type Mapped Value
self dcterms:source
native alskb:source

LinkML Source

name: source
description: Data source name
from_schema: https://cair2015.github.io/als-kg
rank: 1000
slot_uri: dcterms:source
alias: source
domain_of:
- NamedEntity
- Relationship
- Association
range: string