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Class: Association

Abstract base for optional evidence-bearing associations. Use when a relationship cannot be represented sufficiently by a direct object property because the edge needs provenance, evidence, confidence, or additional qualifiers. The subject/predicate/object fields allow the association to be materialized as an RDF triple or property-graph edge.

  • NOTE: this is an abstract class and should not be instantiated directly

URI: biolink:Association

 classDiagram
    class Association
    click Association href "../Association/"
      Relationship <|-- Association
        click Relationship href "../Relationship/"


      Association <|-- DiseasePhenotypeAssociation
        click DiseasePhenotypeAssociation href "../DiseasePhenotypeAssociation/"
      Association <|-- GeneDiseaseAssociation
        click GeneDiseaseAssociation href "../GeneDiseaseAssociation/"
      Association <|-- VariantDiseaseAssociation
        click VariantDiseaseAssociation href "../VariantDiseaseAssociation/"
      Association <|-- VariantProteinEffectAssociation
        click VariantProteinEffectAssociation href "../VariantProteinEffectAssociation/"
      Association <|-- ProteinProteinInteractionAssociation
        click ProteinProteinInteractionAssociation href "../ProteinProteinInteractionAssociation/"
      Association <|-- ProteinPathwayAssociation
        click ProteinPathwayAssociation href "../ProteinPathwayAssociation/"
      Association <|-- DrugTargetAssociation
        click DrugTargetAssociation href "../DrugTargetAssociation/"
      Association <|-- DrugDiseaseTherapeuticAssociation
        click DrugDiseaseTherapeuticAssociation href "../DrugDiseaseTherapeuticAssociation/"
      Association <|-- ExposureDiseaseAssociation
        click ExposureDiseaseAssociation href "../ExposureDiseaseAssociation/"
      Association <|-- TranscriptionFactorRegulationAssociation
        click TranscriptionFactorRegulationAssociation href "../TranscriptionFactorRegulationAssociation/"
      Association <|-- GeneExpressionAssociation
        click GeneExpressionAssociation href "../GeneExpressionAssociation/"
      Association <|-- DiseaseDiseaseAssociation
        click DiseaseDiseaseAssociation href "../DiseaseDiseaseAssociation/"


      Association : association_id

      Association : association_label

      Association : confidence

      Association : evidence_source

      Association : evidence_type

      Association : ingest_date

      Association : last_updated

      Association : object

      Association : predicate

      Association : source

      Association : source_version

      Association : subject

Inheritance

Class Properties

Property Value
Class URI biolink:Association

Slots

Name Cardinality and Range Description Inheritance
association_id 0..1
Uriorcurie		 Stable identifier for the association record direct
association_label 0..1
String		 Human-readable summary of the association direct
subject 1
String		 Subject entity IRI or CURIE used to materialize a direct edge direct
predicate 1
String		 Direct object property represented by this association direct
object 1
String		 Object entity IRI or CURIE used to materialize a direct edge direct
source 0..1
String		 Data source for this association direct
source_version 0..1
String		 Data source version or release date direct
evidence_type 0..1
String		 Type of supporting evidence direct
evidence_source 0..1
String		 Publication, study, database record, or extraction artifact supporting the as... direct
confidence 0..1
String		 Normalized confidence score from 0 to 1 direct
ingest_date 0..1
String		 Date this association was ingested direct
last_updated 0..1
String		 Date this association was last modified direct

Identifier and Mapping Information

Schema Source

  • from schema: https://cair2015.github.io/als-kg

Mappings

Mapping Type Mapped Value
self biolink:Association
native alskb:Association

LinkML Source

Direct

name: Association
description: Abstract base for optional evidence-bearing associations. Use when a
  relationship cannot be represented sufficiently by a direct object property because
  the edge needs provenance, evidence, confidence, or additional qualifiers. The subject/predicate/object
  fields allow the association to be materialized as an RDF triple or property-graph
  edge.
from_schema: https://cair2015.github.io/als-kg
is_a: Relationship
abstract: true
attributes:
  association_id:
    name: association_id
    description: Stable identifier for the association record
    from_schema: https://cair2015.github.io/als-kg
    rank: 1000
    slot_uri: schema:identifier
    domain_of:
    - Association
    range: uriorcurie
  association_label:
    name: association_label
    description: Human-readable summary of the association
    from_schema: https://cair2015.github.io/als-kg
    rank: 1000
    slot_uri: rdfs:label
    domain_of:
    - Association
  subject:
    name: subject
    description: Subject entity IRI or CURIE used to materialize a direct edge
    from_schema: https://cair2015.github.io/als-kg
    slot_uri: rdf:subject
    domain_of:
    - Relationship
    - Association
    required: true
  predicate:
    name: predicate
    description: Direct object property represented by this association
    from_schema: https://cair2015.github.io/als-kg
    slot_uri: rdf:predicate
    domain_of:
    - Relationship
    - Association
    - DiseasePhenotypeAssociation
    - GeneDiseaseAssociation
    - VariantDiseaseAssociation
    - VariantProteinEffectAssociation
    - ProteinProteinInteractionAssociation
    - ProteinPathwayAssociation
    - DrugTargetAssociation
    - DrugDiseaseTherapeuticAssociation
    - ExposureDiseaseAssociation
    - TranscriptionFactorRegulationAssociation
    - GeneExpressionAssociation
    - DiseaseDiseaseAssociation
    required: true
  object:
    name: object
    description: Object entity IRI or CURIE used to materialize a direct edge
    from_schema: https://cair2015.github.io/als-kg
    slot_uri: rdf:object
    domain_of:
    - Relationship
    - Association
    required: true
  source:
    name: source
    description: Data source for this association
    from_schema: https://cair2015.github.io/als-kg
    slot_uri: dcterms:source
    domain_of:
    - NamedEntity
    - Relationship
    - Association
  source_version:
    name: source_version
    description: Data source version or release date
    from_schema: https://cair2015.github.io/als-kg
    slot_uri: dcterms:hasVersion
    domain_of:
    - OntologyClass
    - Association
  evidence_type:
    name: evidence_type
    description: Type of supporting evidence
    from_schema: https://cair2015.github.io/als-kg
    slot_uri: ECO:0000000
    domain_of:
    - Relationship
    - Association
  evidence_source:
    name: evidence_source
    description: Publication, study, database record, or extraction artifact supporting
      the association
    from_schema: https://cair2015.github.io/als-kg
    domain_of:
    - Relationship
    - Association
  confidence:
    name: confidence
    description: Normalized confidence score from 0 to 1
    from_schema: https://cair2015.github.io/als-kg
    domain_of:
    - Relationship
    - Association
  ingest_date:
    name: ingest_date
    description: Date this association was ingested
    from_schema: https://cair2015.github.io/als-kg
    domain_of:
    - OntologyClass
    - Relationship
    - Association
  last_updated:
    name: last_updated
    description: Date this association was last modified
    from_schema: https://cair2015.github.io/als-kg
    slot_uri: dcterms:modified
    domain_of:
    - NamedEntity
    - Association
class_uri: biolink:Association

Induced

name: Association
description: Abstract base for optional evidence-bearing associations. Use when a
  relationship cannot be represented sufficiently by a direct object property because
  the edge needs provenance, evidence, confidence, or additional qualifiers. The subject/predicate/object
  fields allow the association to be materialized as an RDF triple or property-graph
  edge.
from_schema: https://cair2015.github.io/als-kg
is_a: Relationship
abstract: true
attributes:
  association_id:
    name: association_id
    description: Stable identifier for the association record
    from_schema: https://cair2015.github.io/als-kg
    rank: 1000
    slot_uri: schema:identifier
    alias: association_id
    owner: Association
    domain_of:
    - Association
    range: uriorcurie
  association_label:
    name: association_label
    description: Human-readable summary of the association
    from_schema: https://cair2015.github.io/als-kg
    rank: 1000
    slot_uri: rdfs:label
    alias: association_label
    owner: Association
    domain_of:
    - Association
    range: string
  subject:
    name: subject
    description: Subject entity IRI or CURIE used to materialize a direct edge
    from_schema: https://cair2015.github.io/als-kg
    slot_uri: rdf:subject
    alias: subject
    owner: Association
    domain_of:
    - Relationship
    - Association
    range: string
    required: true
  predicate:
    name: predicate
    description: Direct object property represented by this association
    from_schema: https://cair2015.github.io/als-kg
    slot_uri: rdf:predicate
    alias: predicate
    owner: Association
    domain_of:
    - Relationship
    - Association
    - DiseasePhenotypeAssociation
    - GeneDiseaseAssociation
    - VariantDiseaseAssociation
    - VariantProteinEffectAssociation
    - ProteinProteinInteractionAssociation
    - ProteinPathwayAssociation
    - DrugTargetAssociation
    - DrugDiseaseTherapeuticAssociation
    - ExposureDiseaseAssociation
    - TranscriptionFactorRegulationAssociation
    - GeneExpressionAssociation
    - DiseaseDiseaseAssociation
    range: string
    required: true
  object:
    name: object
    description: Object entity IRI or CURIE used to materialize a direct edge
    from_schema: https://cair2015.github.io/als-kg
    slot_uri: rdf:object
    alias: object
    owner: Association
    domain_of:
    - Relationship
    - Association
    range: string
    required: true
  source:
    name: source
    description: Data source for this association
    from_schema: https://cair2015.github.io/als-kg
    slot_uri: dcterms:source
    alias: source
    owner: Association
    domain_of:
    - NamedEntity
    - Relationship
    - Association
    range: string
  source_version:
    name: source_version
    description: Data source version or release date
    from_schema: https://cair2015.github.io/als-kg
    slot_uri: dcterms:hasVersion
    alias: source_version
    owner: Association
    domain_of:
    - OntologyClass
    - Association
    range: string
  evidence_type:
    name: evidence_type
    description: Type of supporting evidence
    from_schema: https://cair2015.github.io/als-kg
    slot_uri: ECO:0000000
    alias: evidence_type
    owner: Association
    domain_of:
    - Relationship
    - Association
    range: string
  evidence_source:
    name: evidence_source
    description: Publication, study, database record, or extraction artifact supporting
      the association
    from_schema: https://cair2015.github.io/als-kg
    alias: evidence_source
    owner: Association
    domain_of:
    - Relationship
    - Association
    range: string
  confidence:
    name: confidence
    description: Normalized confidence score from 0 to 1
    from_schema: https://cair2015.github.io/als-kg
    alias: confidence
    owner: Association
    domain_of:
    - Relationship
    - Association
    range: string
  ingest_date:
    name: ingest_date
    description: Date this association was ingested
    from_schema: https://cair2015.github.io/als-kg
    alias: ingest_date
    owner: Association
    domain_of:
    - OntologyClass
    - Relationship
    - Association
    range: string
  last_updated:
    name: last_updated
    description: Date this association was last modified
    from_schema: https://cair2015.github.io/als-kg
    slot_uri: dcterms:modified
    alias: last_updated
    owner: Association
    domain_of:
    - NamedEntity
    - Association
    range: string
class_uri: biolink:Association