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Class: NamedEntity

Root class for all named entities in the ALS-KG ontology. Provides core ontology metadata (id, label, definition, synonyms, xrefs).

  • NOTE: this is an abstract class and should not be instantiated directly

URI: biolink:NamedThing

 classDiagram
    class NamedEntity
    click NamedEntity href "../NamedEntity/"
      NamedEntity <|-- OntologyClass
        click OntologyClass href "../OntologyClass/"

      NamedEntity : comment

      NamedEntity : definition

      NamedEntity : id

      NamedEntity : is_obsolete

      NamedEntity : label

      NamedEntity : last_updated

      NamedEntity : source

      NamedEntity : synonym

      NamedEntity : xref

Inheritance

Class Properties

Property Value
Class URI biolink:NamedThing

Slots

Name Cardinality and Range Description Inheritance
id 1
String		 Persistent unique identifier (IRI) direct
label 1
String		 Preferred human-readable label direct
definition 0..1
String		 Formal textual definition direct
synonym 0..1
String		 Alternative names direct
xref 0..1
String		 Cross-references to external ontologies direct
comment 0..1
String		 Informal notes or comments direct
is_obsolete 0..1
String		 Deprecation flag direct
source 0..1
String		 Original source/database direct
last_updated 0..1
String		 Last modification timestamp direct

Identifier and Mapping Information

Schema Source

  • from schema: https://cair2015.github.io/als-kg

Mappings

Mapping Type Mapped Value
self biolink:NamedThing
native alskb:NamedEntity

LinkML Source

Direct

name: NamedEntity
description: Root class for all named entities in the ALS-KG ontology. Provides core
  ontology metadata (id, label, definition, synonyms, xrefs).
from_schema: https://cair2015.github.io/als-kg
abstract: true
attributes:
  id:
    name: id
    description: Persistent unique identifier (IRI)
    from_schema: https://cair2015.github.io/als-kg
    slot_uri: schema:identifier
    domain_of:
    - NamedEntity
    required: true
  label:
    name: label
    description: Preferred human-readable label
    from_schema: https://cair2015.github.io/als-kg
    slot_uri: rdfs:label
    domain_of:
    - NamedEntity
    required: true
  definition:
    name: definition
    description: Formal textual definition
    from_schema: https://cair2015.github.io/als-kg
    slot_uri: IAO:0000115
    domain_of:
    - NamedEntity
  synonym:
    name: synonym
    description: Alternative names
    from_schema: https://cair2015.github.io/als-kg
    slot_uri: oboInOwl:hasRelatedSynonym
    domain_of:
    - NamedEntity
  xref:
    name: xref
    description: Cross-references to external ontologies
    from_schema: https://cair2015.github.io/als-kg
    slot_uri: oboInOwl:hasDbXref
    domain_of:
    - NamedEntity
  comment:
    name: comment
    description: Informal notes or comments
    from_schema: https://cair2015.github.io/als-kg
    slot_uri: rdfs:comment
    domain_of:
    - NamedEntity
  is_obsolete:
    name: is_obsolete
    description: Deprecation flag
    from_schema: https://cair2015.github.io/als-kg
    slot_uri: owl:deprecated
    ifabsent: 'false'
    domain_of:
    - NamedEntity
  source:
    name: source
    description: Original source/database
    from_schema: https://cair2015.github.io/als-kg
    slot_uri: dcterms:source
    domain_of:
    - NamedEntity
    - Relationship
    - Association
  last_updated:
    name: last_updated
    description: Last modification timestamp
    from_schema: https://cair2015.github.io/als-kg
    slot_uri: dcterms:modified
    domain_of:
    - NamedEntity
    - Association
class_uri: biolink:NamedThing

Induced

name: NamedEntity
description: Root class for all named entities in the ALS-KG ontology. Provides core
  ontology metadata (id, label, definition, synonyms, xrefs).
from_schema: https://cair2015.github.io/als-kg
abstract: true
attributes:
  id:
    name: id
    description: Persistent unique identifier (IRI)
    from_schema: https://cair2015.github.io/als-kg
    slot_uri: schema:identifier
    alias: id
    owner: NamedEntity
    domain_of:
    - NamedEntity
    range: string
    required: true
  label:
    name: label
    description: Preferred human-readable label
    from_schema: https://cair2015.github.io/als-kg
    slot_uri: rdfs:label
    alias: label
    owner: NamedEntity
    domain_of:
    - NamedEntity
    range: string
    required: true
  definition:
    name: definition
    description: Formal textual definition
    from_schema: https://cair2015.github.io/als-kg
    slot_uri: IAO:0000115
    alias: definition
    owner: NamedEntity
    domain_of:
    - NamedEntity
    range: string
  synonym:
    name: synonym
    description: Alternative names
    from_schema: https://cair2015.github.io/als-kg
    slot_uri: oboInOwl:hasRelatedSynonym
    alias: synonym
    owner: NamedEntity
    domain_of:
    - NamedEntity
    range: string
  xref:
    name: xref
    description: Cross-references to external ontologies
    from_schema: https://cair2015.github.io/als-kg
    slot_uri: oboInOwl:hasDbXref
    alias: xref
    owner: NamedEntity
    domain_of:
    - NamedEntity
    range: string
  comment:
    name: comment
    description: Informal notes or comments
    from_schema: https://cair2015.github.io/als-kg
    slot_uri: rdfs:comment
    alias: comment
    owner: NamedEntity
    domain_of:
    - NamedEntity
    range: string
  is_obsolete:
    name: is_obsolete
    description: Deprecation flag
    from_schema: https://cair2015.github.io/als-kg
    slot_uri: owl:deprecated
    ifabsent: 'false'
    alias: is_obsolete
    owner: NamedEntity
    domain_of:
    - NamedEntity
    range: string
  source:
    name: source
    description: Original source/database
    from_schema: https://cair2015.github.io/als-kg
    slot_uri: dcterms:source
    alias: source
    owner: NamedEntity
    domain_of:
    - NamedEntity
    - Relationship
    - Association
    range: string
  last_updated:
    name: last_updated
    description: Last modification timestamp
    from_schema: https://cair2015.github.io/als-kg
    slot_uri: dcterms:modified
    alias: last_updated
    owner: NamedEntity
    domain_of:
    - NamedEntity
    - Association
    range: string
class_uri: biolink:NamedThing