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Class: ExposureOrStressor

Environmental exposure or chemical stressor from CTD ontology. ALS-relevant: BMAA, organophosphate pesticides, heavy metals, solvents.

URI: biolink:ChemicalSubstance

 classDiagram
    class ExposureOrStressor
    click ExposureOrStressor href "../ExposureOrStressor/"
      ChemicalEntity <|-- ExposureOrStressor
        click ChemicalEntity href "../ChemicalEntity/"

      ExposureOrStressor : als_relevance

      ExposureOrStressor : cas_number

      ExposureOrStressor : comment

      ExposureOrStressor : ctd_id

      ExposureOrStressor : definition

      ExposureOrStressor : exposure_name

      ExposureOrStressor : exposure_type

      ExposureOrStressor : id

      ExposureOrStressor : ingest_date

      ExposureOrStressor : is_obsolete

      ExposureOrStressor : label

      ExposureOrStressor : last_updated

      ExposureOrStressor : mesh_id

      ExposureOrStressor : source

      ExposureOrStressor : source_version

      ExposureOrStressor : synonym

      ExposureOrStressor : xref

Inheritance

Class Properties

Property Value
Class URI biolink:ChemicalSubstance

Slots

Name Cardinality and Range Description Inheritance
ctd_id 1
CtdIdentifier		 direct
exposure_name 0..1
String		 Standard name of exposure/stressor direct
exposure_type 0..1
String		 Category (chemical, metal, pesticide, radiation, biological, other) direct
mesh_id 0..1
String		 MeSH ID for exposure agent direct
cas_number 0..1
String		 CAS Registry number direct
als_relevance 0..1
Boolean		 Flagged as ALS-relevant in literature direct
source_version 0..1
String		 Source database/ontology version OntologyClass
ingest_date 0..1
String		 When entity was imported into ALS-KG OntologyClass
id 1
String		 Persistent unique identifier (IRI) NamedEntity
label 1
String		 Preferred human-readable label NamedEntity
definition 0..1
String		 Formal textual definition NamedEntity
synonym 0..1
String		 Alternative names NamedEntity
xref 0..1
String		 Cross-references to external ontologies NamedEntity
comment 0..1
String		 Informal notes or comments NamedEntity
is_obsolete 0..1
String		 Deprecation flag NamedEntity
source 0..1
String		 Original source/database NamedEntity
last_updated 0..1
String		 Last modification timestamp NamedEntity

Usages

used by used in type used
ExposureDiseaseAssociation exposure range ExposureOrStressor

Identifier and Mapping Information

Schema Source

  • from schema: https://cair2015.github.io/als-kg

Mappings

Mapping Type Mapped Value
self biolink:ChemicalSubstance
native alskb:ExposureOrStressor

LinkML Source

Direct

name: ExposureOrStressor
description: 'Environmental exposure or chemical stressor from CTD ontology. ALS-relevant:
  BMAA, organophosphate pesticides, heavy metals, solvents.'
from_schema: https://cair2015.github.io/als-kg
is_a: ChemicalEntity
attributes:
  ctd_id:
    name: ctd_id
    from_schema: https://cair2015.github.io/als-kg
    rank: 1000
    identifier: true
    domain_of:
    - ExposureOrStressor
    range: CtdIdentifier
    required: true
  exposure_name:
    name: exposure_name
    description: Standard name of exposure/stressor
    from_schema: https://cair2015.github.io/als-kg
    rank: 1000
    slot_uri: schema:name
    domain_of:
    - ExposureOrStressor
  exposure_type:
    name: exposure_type
    description: Category (chemical, metal, pesticide, radiation, biological, other)
    from_schema: https://cair2015.github.io/als-kg
    rank: 1000
    domain_of:
    - ExposureOrStressor
  mesh_id:
    name: mesh_id
    description: MeSH ID for exposure agent
    from_schema: https://cair2015.github.io/als-kg
    domain_of:
    - Anatomy
    - ExposureOrStressor
  cas_number:
    name: cas_number
    description: CAS Registry number
    from_schema: https://cair2015.github.io/als-kg
    rank: 1000
    domain_of:
    - ExposureOrStressor
  als_relevance:
    name: als_relevance
    description: Flagged as ALS-relevant in literature
    from_schema: https://cair2015.github.io/als-kg
    rank: 1000
    domain_of:
    - ExposureOrStressor
    range: boolean
class_uri: biolink:ChemicalSubstance

Induced

name: ExposureOrStressor
description: 'Environmental exposure or chemical stressor from CTD ontology. ALS-relevant:
  BMAA, organophosphate pesticides, heavy metals, solvents.'
from_schema: https://cair2015.github.io/als-kg
is_a: ChemicalEntity
attributes:
  ctd_id:
    name: ctd_id
    from_schema: https://cair2015.github.io/als-kg
    rank: 1000
    identifier: true
    alias: ctd_id
    owner: ExposureOrStressor
    domain_of:
    - ExposureOrStressor
    range: CtdIdentifier
    required: true
  exposure_name:
    name: exposure_name
    description: Standard name of exposure/stressor
    from_schema: https://cair2015.github.io/als-kg
    rank: 1000
    slot_uri: schema:name
    alias: exposure_name
    owner: ExposureOrStressor
    domain_of:
    - ExposureOrStressor
    range: string
  exposure_type:
    name: exposure_type
    description: Category (chemical, metal, pesticide, radiation, biological, other)
    from_schema: https://cair2015.github.io/als-kg
    rank: 1000
    alias: exposure_type
    owner: ExposureOrStressor
    domain_of:
    - ExposureOrStressor
    range: string
  mesh_id:
    name: mesh_id
    description: MeSH ID for exposure agent
    from_schema: https://cair2015.github.io/als-kg
    alias: mesh_id
    owner: ExposureOrStressor
    domain_of:
    - Anatomy
    - ExposureOrStressor
    range: string
  cas_number:
    name: cas_number
    description: CAS Registry number
    from_schema: https://cair2015.github.io/als-kg
    rank: 1000
    alias: cas_number
    owner: ExposureOrStressor
    domain_of:
    - ExposureOrStressor
    range: string
  als_relevance:
    name: als_relevance
    description: Flagged as ALS-relevant in literature
    from_schema: https://cair2015.github.io/als-kg
    rank: 1000
    alias: als_relevance
    owner: ExposureOrStressor
    domain_of:
    - ExposureOrStressor
    range: boolean
  source_version:
    name: source_version
    description: Source database/ontology version
    from_schema: https://cair2015.github.io/als-kg
    slot_uri: dcterms:hasVersion
    alias: source_version
    owner: ExposureOrStressor
    domain_of:
    - OntologyClass
    - Association
    range: string
  ingest_date:
    name: ingest_date
    description: When entity was imported into ALS-KG
    from_schema: https://cair2015.github.io/als-kg
    alias: ingest_date
    owner: ExposureOrStressor
    domain_of:
    - OntologyClass
    - Relationship
    - Association
    range: string
  id:
    name: id
    description: Persistent unique identifier (IRI)
    from_schema: https://cair2015.github.io/als-kg
    slot_uri: schema:identifier
    alias: id
    owner: ExposureOrStressor
    domain_of:
    - NamedEntity
    range: string
    required: true
  label:
    name: label
    description: Preferred human-readable label
    from_schema: https://cair2015.github.io/als-kg
    slot_uri: rdfs:label
    alias: label
    owner: ExposureOrStressor
    domain_of:
    - NamedEntity
    range: string
    required: true
  definition:
    name: definition
    description: Formal textual definition
    from_schema: https://cair2015.github.io/als-kg
    slot_uri: IAO:0000115
    alias: definition
    owner: ExposureOrStressor
    domain_of:
    - NamedEntity
    range: string
  synonym:
    name: synonym
    description: Alternative names
    from_schema: https://cair2015.github.io/als-kg
    slot_uri: oboInOwl:hasRelatedSynonym
    alias: synonym
    owner: ExposureOrStressor
    domain_of:
    - NamedEntity
    range: string
  xref:
    name: xref
    description: Cross-references to external ontologies
    from_schema: https://cair2015.github.io/als-kg
    slot_uri: oboInOwl:hasDbXref
    alias: xref
    owner: ExposureOrStressor
    domain_of:
    - NamedEntity
    range: string
  comment:
    name: comment
    description: Informal notes or comments
    from_schema: https://cair2015.github.io/als-kg
    slot_uri: rdfs:comment
    alias: comment
    owner: ExposureOrStressor
    domain_of:
    - NamedEntity
    range: string
  is_obsolete:
    name: is_obsolete
    description: Deprecation flag
    from_schema: https://cair2015.github.io/als-kg
    slot_uri: owl:deprecated
    ifabsent: 'false'
    alias: is_obsolete
    owner: ExposureOrStressor
    domain_of:
    - NamedEntity
    range: string
  source:
    name: source
    description: Original source/database
    from_schema: https://cair2015.github.io/als-kg
    slot_uri: dcterms:source
    alias: source
    owner: ExposureOrStressor
    domain_of:
    - NamedEntity
    - Relationship
    - Association
    range: string
  last_updated:
    name: last_updated
    description: Last modification timestamp
    from_schema: https://cair2015.github.io/als-kg
    slot_uri: dcterms:modified
    alias: last_updated
    owner: ExposureOrStressor
    domain_of:
    - NamedEntity
    - Association
    range: string
class_uri: biolink:ChemicalSubstance