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Slot: reactome_db_id

Internal Reactome database identifier assigned to a database object.

URI: reactome:reactomeDbId Alias: reactome_db_id

Applicable Classes

Name Description Modifies Slot
BlackBoxEvent Reaction-like event included in the pathway model despite incomplete mechanis... no
Summation Narrative summary record containing prose that explains the biological meanin... no
Drug Therapeutic or intervention-oriented physical entity modeled in the Reactome ... no
PositiveRegulation Regulation that increases, enables, or positively influences the occurrence o... no
ReferenceGeneProduct Reference sequence corresponding to a gene product, typically protein-centric no
DatabaseIdentifier Cross-reference record that pairs an identifier string with a reference datab... no
Depolymerization Event representing breakdown of a polymer into constituent or smaller units no
LiteratureReference Literature citation record, commonly representing a PubMed-indexed paper supp... no
Pathway Curated grouping of biologically related events representing a pathway or pat... no
NegativeRegulation Regulation that decreases, inhibits, or negatively influences the occurrence ... no
Interaction Interaction record associated with an event or set of participants no
ReactionLikeEvent Event in which physical entities participate as inputs, outputs, regulators, ... no
Polymerization Event representing formation of a polymer from repeated or assembling units no
CandidateSet Entity set whose members are candidates for fulfilling a shared biological ro... no
ReferenceSequence Reference identity for a sequence-bearing biomolecule no
Event Biological occurrence or process unit in Reactome, covering both pathways and... no
ReferenceRnaSequence Reference identity for an RNA sequence no
Taxon Taxonomic concept used for taxonomic assignment or metadata no
PhysicalEntity Concrete biological participant whose identity reflects both underlying molec... no
Cell Cell or cell-like biological unit treated as a physical participant in an eve... no
SequenceEntity Sequence-bearing physical entity linked to a stable reference sequence and op... no
Protein Protein physical entity linked to a reference gene product and optionally dec... no
SimpleEntity Simple molecular entity, typically a small molecule or other non-sequence-bas... no
CatalystActivity Reified catalytic assertion connecting a catalyst bearer, a GO molecular func... no
GoCellularComponentTerm Wrapper object for a GO cellular component term used in entity or location an... no
DefinedSet Entity set whose members are explicitly curated as the intended interchangeab... no
ReferenceIsoform Reference sequence representing a specific isoform-level identity no
ReferenceMolecule Reference identity for a small molecule, simple chemical, or chemically groun... no
ReferenceDatabase Metadata record describing an external database or authority used for identif... no
Reaction Standard reaction-like event with explicit transformed inputs and outputs no
Person Person record used primarily for provenance, authorship, and curation attribu... no
GoMolecularFunctionTerm Wrapper object for a GO molecular function term used in Reactome catalysis mo... no
ProteinDrug Drug represented as a protein therapeutic or protein-derived biologic no
RnaDrug Drug represented as an RNA-based therapeutic agent no
GoBiologicalProcessTerm Wrapper object for a GO biological process term used for pathway or event ali... no
InstanceEdit Provenance record describing a curation action such as creation, modification... no
Compartment Cellular or subcellular location object used to state where an event occurs o... no
Polymer Polymer entity abstracted in terms of one or more repeated units no
ReactionTypeTerm Controlled vocabulary term used to characterize a reaction-like event no
ReferenceTherapeutic Reference identity for a therapeutic or intervention-oriented entity no
DatabaseObject Root class for most Reactome schema objects and the main provenance-bearing s... yes
AbstractModifiedResidue Feature record describing a modified residue or residue-level state on a sequ... no
ReferenceGroup Grouped reference identity used when an invariant identity is represented at ... no
Disease Disease concept used to contextualize events and entities in pathological set... no
EntitySet Curated set of physical entities that are treated as functionally interchange... no
GenomeEncodedEntity Physical entity whose existence is grounded in a genome-encoded product such ... no
ReferenceDnaSequence Reference identity for a DNA sequence no
Requirement Regulation-like assertion indicating that a regulator or participant is requi... no
Regulation Reified regulatory assertion linking a regulator physical entity to a regulat... no
Publication Publication record used as evidence or supporting documentation for curated b... no
OrganismTaxon Organism taxon record representing the organismal context for entities and ev... no
Complex Physical entity composed of two or more component physical entities assembled... no
ReferenceEntity Invariant reference identity used to connect multiple contextualized physical... no
OtherEntity Catch-all physical entity class for biologically relevant participants not co... no
ChemicalDrug Drug represented primarily as a chemical or small-molecule therapeutic agent no

Properties

Type and Range

Property Value
Range Integer
Domain Of DatabaseObject
Slot URI reactome:reactomeDbId

Cardinality and Requirements

Property Value

Comments

  • Reactome DB_ID values are implementation-oriented identifiers rather than stable public identifiers.

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/reactome-ontology

Mappings

Mapping Type Mapped Value
self reactome:reactomeDbId
native reactome:reactome_db_id

LinkML Source

name: reactome_db_id
description: Internal Reactome database identifier assigned to a database object.
comments:
- Reactome DB_ID values are implementation-oriented identifiers rather than stable
  public identifiers.
from_schema: https://w3id.org/reactome-ontology
rank: 1000
slot_uri: reactome:reactomeDbId
alias: reactome_db_id
domain_of:
- database_object
range: integer
multivalued: false