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Slot: located_in_compartment

Compartment in which an entity resides or an event occurs.

URI: reactome:locatedInCompartment Alias: located_in_compartment

Applicable Classes

Name Description Modifies Slot
RnaDrug Drug represented as an RNA-based therapeutic agent no
Pathway Curated grouping of biologically related events representing a pathway or pat... no
Polymerization Event representing formation of a polymer from repeated or assembling units no
SimpleEntity Simple molecular entity, typically a small molecule or other non-sequence-bas... no
BlackBoxEvent Reaction-like event included in the pathway model despite incomplete mechanis... no
Drug Therapeutic or intervention-oriented physical entity modeled in the Reactome ... no
SequenceEntity Sequence-bearing physical entity linked to a stable reference sequence and op... no
Protein Protein physical entity linked to a reference gene product and optionally dec... no
Reaction Standard reaction-like event with explicit transformed inputs and outputs no
Event Biological occurrence or process unit in Reactome, covering both pathways and... no
CandidateSet Entity set whose members are candidates for fulfilling a shared biological ro... no
PhysicalEntity Concrete biological participant whose identity reflects both underlying molec... no
Polymer Polymer entity abstracted in terms of one or more repeated units no
EntitySet Curated set of physical entities that are treated as functionally interchange... no
ReactionLikeEvent Event in which physical entities participate as inputs, outputs, regulators, ... no
OtherEntity Catch-all physical entity class for biologically relevant participants not co... no
Complex Physical entity composed of two or more component physical entities assembled... no
GenomeEncodedEntity Physical entity whose existence is grounded in a genome-encoded product such ... no
ProteinDrug Drug represented as a protein therapeutic or protein-derived biologic no
ChemicalDrug Drug represented primarily as a chemical or small-molecule therapeutic agent no
Depolymerization Event representing breakdown of a polymer into constituent or smaller units no
Cell Cell or cell-like biological unit treated as a physical participant in an eve... no
DefinedSet Entity set whose members are explicitly curated as the intended interchangeab... no

Properties

Type and Range

Property Value
Range Compartment
Domain Of Event, PhysicalEntity
Slot URI reactome:locatedInCompartment

Cardinality and Requirements

Property Value
Multivalued Yes

Comments

  • In Reactome, compartment is identity-relevant for many physical entities.

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/reactome-ontology

Mappings

Mapping Type Mapped Value
self reactome:locatedInCompartment
native reactome:located_in_compartment

LinkML Source

name: located_in_compartment
description: Compartment in which an entity resides or an event occurs.
comments:
- In Reactome, compartment is identity-relevant for many physical entities.
from_schema: https://w3id.org/reactome-ontology
rank: 1000
slot_uri: reactome:locatedInCompartment
alias: located_in_compartment
domain_of:
- event
- physical_entity
range: compartment
multivalued: true