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Slot: reactome_db_id

Internal Reactome database identifier assigned to a database object.

URI: reactome:reactomeDbId Alias: reactome_db_id

Applicable Classes

Name Description Modifies Slot
ReferenceEntity Invariant reference identity used to connect multiple contextualized physical... no
ReferenceTherapeutic Reference identity for a therapeutic or intervention-oriented entity no
Interaction Interaction record associated with an event or set of participants no
RnaDrug Drug represented as an RNA-based therapeutic agent no
DatabaseObject Root class for most Reactome schema objects and the main provenance-bearing s... yes
ReferenceIsoform Reference sequence representing a specific isoform-level identity no
ReferenceSequence Reference identity for a sequence-bearing biomolecule no
DefinedSet Entity set whose members are explicitly curated as the intended interchangeab... no
Disease Disease concept used to contextualize events and entities in pathological set... no
PhysicalEntity Concrete biological participant whose identity reflects both underlying molec... no
ReferenceDnaSequence Reference identity for a DNA sequence no
AbstractModifiedResidue Feature record describing a modified residue or residue-level state on a sequ... no
GoCellularComponentTerm Wrapper object for a GO cellular component term used in entity or location an... no
Polymerization Event representing formation of a polymer from repeated or assembling units no
ReactionTypeTerm Controlled vocabulary term used to characterize a reaction-like event no
Cell Cell or cell-like biological unit treated as a physical participant in an eve... no
LiteratureReference Literature citation record, commonly representing a PubMed-indexed paper supp... no
Pathway Curated grouping of biologically related events representing a pathway or pat... no
Polymer Polymer entity abstracted in terms of one or more repeated units no
Requirement Regulation-like assertion indicating that a regulator or participant is requi... no
OrganismTaxon Organism taxon record representing the organismal context for entities and ev... no
ReactionLikeEvent Event in which physical entities participate as inputs, outputs, regulators, ... no
PositiveRegulation Regulation that increases, enables, or positively influences the occurrence o... no
Drug Therapeutic or intervention-oriented physical entity modeled in the Reactome ... no
NegativeRegulation Regulation that decreases, inhibits, or negatively influences the occurrence ... no
Event Biological occurrence or process unit in Reactome, covering both pathways and... no
Compartment Cellular or subcellular location object used to state where an event occurs o... no
ReferenceGeneProduct Reference sequence corresponding to a gene product, typically protein-centric no
Complex Physical entity composed of two or more component physical entities assembled... no
DatabaseIdentifier Cross-reference record that pairs an identifier string with a reference datab... no
Publication Publication record used as evidence or supporting documentation for curated b... no
CandidateSet Entity set whose members are candidates for fulfilling a shared biological ro... no
Taxon Taxonomic concept used for taxonomic assignment or metadata no
OtherEntity Catch-all physical entity class for biologically relevant participants not co... no
ChemicalDrug Drug represented primarily as a chemical or small-molecule therapeutic agent no
Summation Narrative summary record containing prose that explains the biological meanin... no
ProteinDrug Drug represented as a protein therapeutic or protein-derived biologic no
Depolymerization Event representing breakdown of a polymer into constituent or smaller units no
ReferenceMolecule Reference identity for a small molecule, simple chemical, or chemically groun... no
ReferenceDatabase Metadata record describing an external database or authority used for identif... no
EntitySet Curated set of physical entities that are treated as functionally interchange... no
Person Person record used primarily for provenance, authorship, and curation attribu... no
CatalystActivity Reified catalytic assertion connecting a catalyst bearer, a GO molecular func... no
SequenceEntity Sequence-bearing physical entity linked to a stable reference sequence and op... no
BlackBoxEvent Reaction-like event included in the pathway model despite incomplete mechanis... no
ReferenceGroup Grouped reference identity used when an invariant identity is represented at ... no
Regulation Reified regulatory assertion linking a regulator physical entity to a regulat... no
SimpleEntity Simple molecular entity, typically a small molecule or other non-sequence-bas... no
Reaction Standard reaction-like event with explicit transformed inputs and outputs no
GoBiologicalProcessTerm Wrapper object for a GO biological process term used for pathway or event ali... no
Protein Protein physical entity linked to a reference gene product and optionally dec... no
InstanceEdit Provenance record describing a curation action such as creation, modification... no
GenomeEncodedEntity Physical entity whose existence is grounded in a genome-encoded product such ... no
ReferenceRnaSequence Reference identity for an RNA sequence no
GoMolecularFunctionTerm Wrapper object for a GO molecular function term used in Reactome catalysis mo... no

Properties

Type and Range

Property Value
Range Integer
Domain Of DatabaseObject
Slot URI reactome:reactomeDbId

Cardinality and Requirements

Property Value

Comments

  • Reactome DB_ID values are implementation-oriented identifiers rather than stable public identifiers.

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/reactome-ontology

Mappings

Mapping Type Mapped Value
self reactome:reactomeDbId
native reactome:reactome_db_id

LinkML Source

name: reactome_db_id
description: Internal Reactome database identifier assigned to a database object.
comments:
- Reactome DB_ID values are implementation-oriented identifiers rather than stable
  public identifiers.
from_schema: https://w3id.org/reactome-ontology
rank: 1000
slot_uri: reactome:reactomeDbId
alias: reactome_db_id
domain_of:
- database_object
range: integer
multivalued: false