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Slot: source

Data source name

URI: dcterms:source Alias: source

Applicable Classes

Name Description Modifies Slot
CellularComponent Gene Ontology Cellular Component term no
OntologyClass Abstract base for entity classes (nodes in knowledge graph) no
Protein Protein product (UniProt model) no
ExposureOrStressor Environmental exposure or chemical stressor from CTD ontology no
ProteinProteinInteractionAssociation Optional association for Protein -> Protein when interaction score, interacti... no
ChemicalEntity Abstract base for chemical and pharmacological entities (drugs, exposures, me... no
DiseaseDiseaseAssociation Optional association for Disease -> Disease when disease-disease edges need r... no
BiologicalProcess Gene Ontology Biological Process term no
Pathway Reactome pathway entity representing a curated biological pathway or reaction... no
Relationship Abstract base for reified relationships (edges with explicit properties) no
NamedEntity Root class for all named entities in the ALS-KG ontology no
BiologicalConcept Abstract base for functional/biological concepts from GO and related ontologi... no
Phenotype Phenotypic feature (HPO term) no
DrugTargetAssociation Optional association for Drug -> MolecularEntity when action type, binding af... no
DiseasePhenotypeAssociation Optional association for Disease -> Phenotype when the clinical feature requi... no
Gene Human gene entity (Entrez/NCBI model) no
ProteinPathwayAssociation Optional association for Protein -> Pathway when Reactome evidence code, sour... no
MolecularFunction Gene Ontology Molecular Function term no
Association Abstract base for optional evidence-bearing associations no
DiseaseOrPhenotype Abstract parent class for all disease/phenotype entities no
TranscriptionFactorRegulationAssociation Optional association for TranscriptionFactor -> Gene when direction, confiden... no
GeneExpressionAssociation Optional association for Gene -> Anatomy when expression level, specificity, ... no
TranscriptionFactor Gene encoding a transcription factor (TF) no
Disease Disease entity no
Drug Pharmaceutical compound (DrugBank model) no
VariantProteinEffectAssociation Optional association for Variant -> Protein when protein consequence, predict... no
GeneDiseaseAssociation Optional association for Gene -> Disease when causal/risk/protective or corre... no
VariantDiseaseAssociation Optional association for Variant -> Disease when variant-level evidence, clin... no
Variant Genetic sequence variant (ClinVar model) no
Anatomy Anatomical structure (UBERON ontology) no
DiseaseSubtype Molecularly-defined disease subtype derived from clustering analysis (transcr... no
ExposureDiseaseAssociation Optional association for ExposureOrStressor -> Disease when epidemiology, mec... no
MolecularEntity Abstract base for molecular-level entities (genes, proteins, variants) no
DrugDiseaseTherapeuticAssociation Optional association for Drug -> Disease when therapeutic indication, approva... no

Properties

Type and Range

Property Value
Range String
Domain Of NamedEntity, Relationship, Association
Slot URI dcterms:source

Cardinality and Requirements

Property Value

Identifier and Mapping Information

Schema Source

  • from schema: https://cair2015.github.io/als-kg

Mappings

Mapping Type Mapped Value
self dcterms:source
native alskb:source

LinkML Source

name: source
description: Data source name
from_schema: https://cair2015.github.io/als-kg
rank: 1000
slot_uri: dcterms:source
alias: source
domain_of:
- NamedEntity
- Relationship
- Association
range: string