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Slot: source

Data source name

URI: dcterms:source Alias: source

Applicable Classes

Name Description Modifies Slot
Phenotype Phenotypic feature (HPO term) no
Drug Pharmaceutical compound (DrugBank model) no
Protein Protein product (UniProt model) no
DrugTargetAssociation Optional association for Drug -> MolecularEntity when action type, binding af... no
CellularComponent Gene Ontology Cellular Component term no
Disease Disease entity no
Variant Genetic sequence variant (ClinVar model) no
DiseaseSubtype Molecularly-defined disease subtype derived from clustering analysis (transcr... no
ProteinProteinInteractionAssociation Optional association for Protein -> Protein when interaction score, interacti... no
GeneExpressionAssociation Optional association for Gene -> Anatomy when expression level, specificity, ... no
ChemicalEntity Abstract base for chemical and pharmacological entities (drugs, exposures, me... no
Anatomy Anatomical structure (UBERON ontology) no
GeneDiseaseAssociation Optional association for Gene -> Disease when causal/risk/protective or corre... no
TranscriptionFactorRegulationAssociation Optional association for TranscriptionFactor -> Gene when direction, confiden... no
MolecularFunction Gene Ontology Molecular Function term no
Gene Human gene entity (Entrez/NCBI model) no
BiologicalConcept Abstract base for functional/biological concepts from GO and related ontologi... no
Relationship Abstract base for reified relationships (edges with explicit properties) no
VariantDiseaseAssociation Optional association for Variant -> Disease when variant-level evidence, clin... no
Association Abstract base for optional evidence-bearing associations no
Pathway Reactome pathway entity representing a curated biological pathway or reaction... no
OntologyClass Abstract base for entity classes (nodes in knowledge graph) no
DiseasePhenotypeAssociation Optional association for Disease -> Phenotype when the clinical feature requi... no
DiseaseOrPhenotype Abstract parent class for all disease/phenotype entities no
ExposureOrStressor Environmental exposure or chemical stressor from CTD ontology no
DrugDiseaseTherapeuticAssociation Optional association for Drug -> Disease when therapeutic indication, approva... no
MolecularEntity Abstract base for molecular-level entities (genes, proteins, variants) no
ExposureDiseaseAssociation Optional association for ExposureOrStressor -> Disease when epidemiology, mec... no
TranscriptionFactor Gene encoding a transcription factor (TF) no
VariantProteinEffectAssociation Optional association for Variant -> Protein when protein consequence, predict... no
ProteinPathwayAssociation Optional association for Protein -> Pathway when Reactome evidence code, sour... no
DiseaseDiseaseAssociation Optional association for Disease -> Disease when disease-disease edges need r... no
NamedEntity Root class for all named entities in the ALS-KG ontology no
BiologicalProcess Gene Ontology Biological Process term no

Properties

Type and Range

Property Value
Range String
Domain Of NamedEntity, Relationship, Association
Slot URI dcterms:source

Cardinality and Requirements

Property Value

Identifier and Mapping Information

Schema Source

  • from schema: https://cair2015.github.io/als-kg

Mappings

Mapping Type Mapped Value
self dcterms:source
native alskb:source

LinkML Source

name: source
description: Data source name
from_schema: https://cair2015.github.io/als-kg
rank: 1000
slot_uri: dcterms:source
alias: source
domain_of:
- NamedEntity
- Relationship
- Association
range: string