Slot: xref
Cross-reference to equivalent entity in another ontology. Format: ONTOLOGY_PREFIX:identifier (e.g. OMIM:104300, Reactome:R-HSA-5673001, GO:0006810)
URI: oboInOwl:hasDbXref
Alias: xref
Applicable Classes
| Name |
Description |
Modifies Slot |
| Gene |
Human gene entity (Entrez/NCBI model) |
no |
| Anatomy |
Anatomical structure (UBERON ontology) |
no |
| MolecularFunction |
Gene Ontology Molecular Function term |
no |
| Protein |
Protein product (UniProt model) |
no |
| DiseaseSubtype |
Molecularly-defined disease subtype derived from clustering analysis (transcr... |
no |
| MolecularEntity |
Abstract base for molecular-level entities (genes, proteins, variants) |
no |
| BiologicalConcept |
Abstract base for functional/biological concepts from GO and related ontologi... |
no |
| Disease |
Disease entity |
no |
| DiseaseOrPhenotype |
Abstract parent class for all disease/phenotype entities |
no |
| CellularComponent |
Gene Ontology Cellular Component term |
no |
| Drug |
Pharmaceutical compound (DrugBank model) |
no |
| Phenotype |
Phenotypic feature (HPO term) |
no |
| Pathway |
Reactome pathway entity representing a curated biological pathway or reaction... |
no |
| TranscriptionFactor |
Gene encoding a transcription factor (TF) |
no |
| ChemicalEntity |
Abstract base for chemical and pharmacological entities (drugs, exposures, me... |
no |
| NamedEntity |
Root class for all named entities in the ALS-KG ontology |
no |
| ExposureOrStressor |
Environmental exposure or chemical stressor from CTD ontology |
no |
| BiologicalProcess |
Gene Ontology Biological Process term |
no |
| Variant |
Genetic sequence variant (ClinVar model) |
no |
| OntologyClass |
Abstract base for entity classes (nodes in knowledge graph) |
no |
Properties
Type and Range
Cardinality and Requirements
| Property |
Value |
| Multivalued |
Yes |
Schema Source
- from schema: https://cair2015.github.io/als-kg
Mappings
| Mapping Type |
Mapped Value |
| self |
oboInOwl:hasDbXref |
| native |
alskb:xref |
LinkML Source
name: xref
description: 'Cross-reference to equivalent entity in another ontology. Format: ONTOLOGY_PREFIX:identifier
(e.g. OMIM:104300, Reactome:R-HSA-5673001, GO:0006810)'
from_schema: https://cair2015.github.io/als-kg
rank: 1000
slot_uri: oboInOwl:hasDbXref
alias: xref
domain_of:
- NamedEntity
range: string
multivalued: true